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# CITATION file created with {cffr} R package
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cff-version: 1.2.0
message: 'To cite package "qch" in publications use:'
type: software
license: GPL-3.0-only
title: 'qch: Query Composite Hypotheses'
version: 2.0.0
doi: 10.32614/CRAN.package.qch
abstract: Provides functions for the joint analysis of Q sets of p-values obtained
  for the same list of items. This joint analysis is performed by querying a composite
  hypothesis, i.e. an arbitrary complex combination of simple hypotheses, as described
  in Mary-Huard et al. (2021) <https://doi.org/10.1093/bioinformatics/btab592> and
  De Walsche et al.(2023) <https://doi.org/10.1101/2024.03.17.585412>. In this approach,
  the Q-uplet of p-values associated with each item is distributed as a multivariate
  mixture, where each of the 2^Q components corresponds to a specific combination
  of simple hypotheses. The dependence between the p-value series is considered using
  a Gaussian copula function. A p-value for the composite hypothesis test is derived
  from the posterior probabilities.
authors:
- family-names: Mary-Huard
  given-names: Tristan
  email: tristan.mary-huard@agroparistech.fr
  orcid: https://orcid.org/0000-0002-3839-9067
- family-names: De Walsche
  given-names: Annaig
  email: annaig.de-walsche@inrae.fr
  orcid: https://orcid.org/0000-0003-0603-1716
repository: https://tmaryhuard.r-universe.dev
commit: cbf2b368ab31a41e547094a19018cbaf7516da19
date-released: '2024-03-29'
contact:
- family-names: Mary-Huard
  given-names: Tristan
  email: tristan.mary-huard@agroparistech.fr
  orcid: https://orcid.org/0000-0002-3839-9067